Unlocking HIV's Hideouts

The Basic Science Breakthroughs Reshaping Our Fight

For over four decades, HIV has challenged scientists with its uncanny ability to evade eradication. At the 2019 Conference on Retroviruses and Opportunistic Infections (CROI), researchers unveiled startling discoveries about how HIV hides within our cells, why some rare individuals achieve remission, and how we might leverage these insights for new therapies. These advances aren't just academic curiosities—they're rewriting our playbook for controlling and potentially curing one of humanity's most persistent viral foes 1 2 .

The Great Escape: How HIV Hides in Plain Sight

HIV's survival hinges on its ability to enter a state of viral latency—integrating its genetic blueprint into our DNA while remaining invisible to immune detection. The 2019 conference spotlighted a cellular defense system called the HUSH complex (Human Silencing Hub) as a master regulator of this process. This discovery emerged from a sophisticated CRISPR-Cas9 screen that systematically knocked out 20,000 genes in HeLa cells 2 .

The Landmark Experiment:
  1. Engineered Viruses: Researchers used integrase-deficient murine leukemia virus (MLV) vectors carrying a green fluorescent protein (GFP) reporter.
  2. CRISPR Screening: Cells were infected with these vectors after gene knockout.
  3. The NP220 Connection: Scientists identified NP220 as the tether anchoring HUSH to viral DNA.
Key Components of the HIV Silencing Machinery
Protein Function HIV Countermeasure
HUSH Complex Recruits histone modifiers for silencing Targeted by SIV Vpx/Vpr proteins
NP220 Binds viral DNA, anchors silencing complex Disappears after viral integration
TRIM28 Silences retroviruses in stem cells Overcome during viral reactivation
Implications

The HUSH complex explains why retroviral gene therapy vectors often fail—and suggests that blocking HUSH could flush latent HIV from reservoirs. Intriguingly, simian immunodeficiency virus (SIV) produces Vpx proteins that dismantle HUSH, hinting at potential therapeutic blueprints 1 2 .

The London Patient: A Blueprint for HIV Remission?

Beyond basic mechanisms, CROI 2019 electrified the audience with reports of a second HIV patient maintaining long-term remission—the "London Patient." This individual received a stem cell transplant from a donor with the CCR5-Δ32 mutation to treat Hodgkin's lymphoma, echoing the earlier "Berlin Patient" case but with critical differences 2 3 .

The Treatment Journey:
  • Transplant Protocol: Unlike the Berlin Patient's intensive conditioning, the London Patient received reduced-intensity chemotherapy without irradiation.
  • Antiretroviral Interruption: At 16 months post-transplant, ART was stopped. Eighteen months later, ultrasensitive tests showed no detectable HIV DNA in CD4+ T cells.
Comparing HIV Cure Cases
Parameter Berlin Patient London Patient Düsseldorf Patient
Conditioning Full chemo + irradiation Reduced-intensity chemo Reduced-intensity chemo
Transplants 2 1 1
ART Interruption 3 years post-transplant 16 months post-transplant 6 months post-transplant
Remission Duration 12+ years 18+ months (at CROI) 3 months (at CROI)
Scientific Significance

The London Patient case demonstrated that irradiation isn't essential for remission. Critically, declining HIV antibodies—a marker of diminishing viral antigens—suggested true remission rather than mere control. As antibody levels fell below detection in 2 of 13 ICISTEM cohort patients, this emerged as a potential biomarker for cure studies 2 3 7 .

Rethinking Prevention: Beyond Viral Suppression

While cure research advanced, CROI 2019 also delivered breakthroughs in preventing transmission—including a landmark trial redefining pre-exposure prophylaxis (PrEP).

The DISCOVER Trial Revolution:

This study compared two PrEP regimens in 5,387 high-risk MSM and transgender women:

  • FTC/TDF (tenofovir disoproxil fumarate/emtricitabine)
  • FTC/TAF (tenofovir alafenamide/emtricitabine)
PrEP Efficacy and Safety in the DISCOVER Trial
Outcome FTC/TDF FTC/TAF Significance
HIV Incidence 0.34/100 PY 0.16/100 PY Non-inferiority established
Bone Density Change -1.0% +0.5% TAF better for bone health
Renal Biomarkers Elevated Stable TAF safer for kidneys
Resistance Cases 4 (FTC-R) 0 TAF may lower resistance risk
Surprising Findings
  • Near-Zero Infections: Only 22 transmissions occurred despite high STI rates.
  • Breakthrough Insights: 20 infections occurred in participants with low drug levels.
  • The TAF Advantage: Superior bone/renal safety positions TAF as an option for patients with osteoporosis or kidney concerns 6 7 .
Beyond Pills
  • Broadly Neutralizing Antibodies: Single subcutaneous injections protected macaques against penile HIV transmission for 15 weeks.
  • On-Demand Options: Vaginal inserts with elvitegravir/TAF provided 92% protection in macaques when inserted 4 hours pre-exposure 6 .

The Scientist's Toolkit: Key Research Technologies

CRISPR-Cas9 Screens

Genome-wide gene function analysis. Identified HUSH complex components 2 .

Single-Copy Assays

Detects <1 HIV RNA/mL. Measured reservoirs in cure cases.

Viral Outgrowth Assays

Quantifies replication-competent virus. Confirmed London Patient remission.

Flow Cytometry

Immune cell profiling. Tracked CD4+ T cell chimerism post-transplant.

The Road Ahead: From Bench to Bedside

1
Latency Reversal 2.0

Targeting HUSH with small molecules could reactivate latent virus for elimination—an approach more precise than HDAC inhibitors like romidepsin, which failed in ACTG A5315 7 .

2
Safer Remission Strategies

CCR5 gene editing (e.g., zinc finger nucleases) showed modest delays in viral rebound, hinting that combining it with immunotherapy might yield functional cures 7 .

3
Prevention Personalization

With TAF/FTC, injectable antibodies, and on-demand inserts, prevention is becoming adaptable to diverse lifestyles.

"Treatment is the best method of ensuring long-term health—but science is narrowing the path to remission."

Dr. Carl Dieffenbach 3

The molecular padlocks hiding HIV are finally being picked, bringing us closer than ever to ending the epidemic.

References